Pardis C. Sabeti : rechercher sur Z-Library

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1

Benchmarking Metagenomics Tools for Taxonomic Classification

Ye, Simon H., Siddle, Katherine J., Park, Daniel J., Sabeti, Pardis C.

Journal:

Année:

2019

Langue:

english

Fichier:

PDF, 3.14 MB

english, 2019

2

An empirical study of the maximal and total information coefficients and leading measures of dependence

Reshef, David N., Reshef, Yakir A., Sabeti, Pardis C., Mitzenmacher, Michael

Journal:

The Annals of Applied Statistics

Année:

2018

Langue:

english

Fichier:

PDF, 3.09 MB

english, 2018

3

Direct Identification of Hundreds of Expression-Modulating Variants using a Multiplexed Reporter Assay

Tewhey, Ryan, Kotliar, Dylan, Park, Daniel S., Liu, Brandon, Winnicki, Sarah, Reilly, Steven K., Andersen, Kristian G., Mikkelsen, Tarjei S., Lander, Eric S., Schaffner, Stephen F., Sabeti, Pardis C.

Journal:

Année:

2018

Langue:

english

Fichier:

PDF, 2.39 MB

english, 2018

4

Detecting Natural Selection in Genomic Data

Vitti, Joseph J., Grossman, Sharon R., Sabeti, Pardis C.

Journal:

Annual Review of Genetics

Année:

2013

Langue:

english

Fichier:

PDF, 517 KB

english, 2013

5

Natural selection and infectious disease in human populations

Karlsson, Elinor K., Kwiatkowski, Dominic P., Sabeti, Pardis C.

Journal:

Nature Reviews Genetics

Année:

2014

Langue:

english

Fichier:

PDF, 2.60 MB

english, 2014

6

10.1038/35075590

Reich, David E., Cargill, Michele, Bolk, Stacey, Ireland, James, Sabeti, Pardis C., Richter, Daniel J., Lavery, Thomas, Kouyoumjian, Rose, Farhadian, Shelli F., Ward, Ryk, Lander, Eric S.

Journal:

Année:

2001

Langue:

english

Fichier:

PDF, 250 KB

english, 2001

7

Genome-wide detection and characterization of positive selection in human populations

Sabeti, Pardis C., Varilly, Patrick, Fry, Ben, Lohmueller, Jason, Hostetter, Elizabeth, Cotsapas, Chris, Xie, Xiaohui, Byrne, Elizabeth H., McCarroll, Steven A., Gaudet, Rachelle

Journal:

Année:

2007

Langue:

english

Fichier:

PDF, 1.23 MB

english, 2007

8

A genetic basis of variation in eccrine sweat gland and hair follicle density

Kamberov, Yana G., Karlsson, Elinor K., Kamberova, Gerda L., Lieberman, Daniel E., Sabeti, Pardis C., Morgan, Bruce A., Tabin, Clifford J.

Journal:

Proceedings of the National Academy of Sciences

Année:

2015

Langue:

english

Fichier:

PDF, 1.11 MB

english, 2015

9

Direct Identification of Hundreds of Expression-Modulating Variants using a Multiplexed Reporter Assay

Tewhey, Ryan, Kotliar, Dylan, Park, Daniel S., Liu, Brandon, Winnicki, Sarah, Reilly, Steven K., Andersen, Kristian G., Mikkelsen, Tarjei S., Lander, Eric S., Schaffner, Stephen F., Sabeti, Pardis C.

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 3.87 MB

english, 2016

10

Roots, Not Parachutes: Research Collaborations Combat Outbreaks

Yozwiak, Nathan L., Happi, Christian T., Grant, Donald S., Schieffelin, John S., Garry, Robert F., Sabeti, Pardis C., Andersen, Kristian G.

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 850 KB

english, 2016

11

Factors Related to Increasing Prevalence of Resistance to Ciprofloxacin and Other Antimicrobial Drugs in Neisseria gonorrhoeae , United States

Goldstein, Edward, Kirkcaldy, Robert D., Reshef, David, Berman, Stuart, Weinstock, Hillard, Sabeti, Pardis, Del Rio, Carlos, Hall, Geraldine, Hook, Edward W., Lipsitch, Marc

Journal:

Emerging Infectious Diseases

Année:

2012

Langue:

english

Fichier:

PDF, 307 KB

english, 2012

12

Is G6PD A- deficiency associated with recurrent stillbirths in The Gambia?

Giorgio Sirugo, Elizabeth A. Schaefer, Alieu Mendy, Pardis Sabeti, Beryl West, Robin Bailey, Fabio Macciardi, Laura A. Zonta, Gijs Walraven

Journal:

American Journal of Medical Genetics Part A

Année:

2004

Langue:

english

Fichier:

PDF, 39 KB

english, 2004

13

Accessing rare activities from random RNA sequences: the importance of the length of molecules in the starting pool

Pardis C. Sabeti, Peter J. Unrau, David P. Bartel

Journal:

Chemistry & Biology

Année:

1997

Langue:

english

Fichier:

PDF, 1.14 MB

english, 1997

14

Variants of the CD40 ligand gene are not associated with increased susceptibility to tuberculosis in West Africa

SarahJ. Campbell, Pardis Sabeti, Katherine Fielding, Jackson Sillah, Boubacar Bah, Per Gustafson, Kebba Manneh, Ida Lisse, Giorgio Sirugo, Richard Bellamy, Steve Bennett, Peter Aaby, KeithP.W.J. McAda

Journal:

Année:

2003

Langue:

english

Fichier:

PDF, 178 KB

english, 2003

15

Detecting recent positive selection in the human genome from haplotype structure

Sabeti, Pardis C., Reich, David E., Higgins, John M., Levine, Haninah Z. P., Richter, Daniel J., Schaffner, Stephen F., Gabriel, Stacey B., Platko, Jill V., Patterson, Nick J., McDonald, Gavin J.

Journal:

Année:

2002

Langue:

english

Fichier:

PDF, 607 KB

english, 2002

16

A high-resolution HLA and SNP haplotype map for disease association studies in the extended human MHC

de Bakker, Paul I W, McVean, Gil, Sabeti, Pardis C, Miretti, Marcos M, Green, Todd, Marchini, Jonathan, Ke, Xiayi, Monsuur, Alienke J, Whittaker, Pamela, Delgado, Marcos

Journal:

Nature Genetics

Année:

2006

Langue:

english

Fichier:

PDF, 1.82 MB

english, 2006

17

A genome-wide map of diversity in Plasmodium falciparum

Volkman, Sarah K, Sabeti, Pardis C, DeCaprio, David, Neafsey, Daniel E, Schaffner, Stephen F, Milner, Danny A, Daily, Johanna P, Sarr, Ousmane, Ndiaye, Daouda, Ndir, Omar

Journal:

Nature Genetics

Année:

2006

Langue:

english

Fichier:

PDF, 363 KB

english, 2006

18

Independent Signals Within the MHC are Associated with Systemic Lupus Erythematosus—A Family-based SNP Study

Michelle Fernando, Christine Stevens, Emily Walsh, Todd Green, Pardis Sabeti, John Rioux, Tim Vyse

Journal:

Clinical Immunology

Année:

2007

Langue:

english

Fichier:

PDF, 52 KB

english, 2007

19

Positive Selection on a High-Sensitivity Allele of the Human Bitter-Taste Receptor TAS2R16

Nicole Soranzo, Bernd Bufe, Pardis C. Sabeti, James F. Wilson, Michael E. Weale, Richard Marguerie, Wolfgang Meyerhof, David B. Goldstein

Journal:

Current Biology

Année:

2005

Langue:

english

Fichier:

PDF, 283 KB

english, 2005

20

Human evolutionary genomics: ethical and interpretive issues

Joseph J. Vitti, Mildred K. Cho, Sarah A. Tishkoff, Pardis C. Sabeti

Journal:

Trends in Genetics

Année:

2012

Langue:

english

Fichier:

PDF, 660 KB

english, 2012

21

Application of genomics to field investigations of malaria by the international centers of excellence for malaria research

Sarah K. Volkman, Daouda Ndiaye, Mahamadou Diakite, Ousmane A. Koita, Davis Nwakanma, Rachel F. Daniels, Daniel J. Park, Daniel E. Neafsey, Marc A.T. Muskavitch, Donald J. Krogstad, Pardis C. Sabeti,

Journal:

Année:

2012

Langue:

english

Fichier:

PDF, 460 KB

english, 2012

22

Genetic Signatures of Strong Recent Positive Selection at the Lactase Gene

Todd Bersaglieri, Pardis C. Sabeti, Nick Patterson, Trisha Vanderploeg, Steve F. Schaffner, Jared A. Drake, Matthew Rhodes, David E. Reich, Joel N. Hirschhorn

Journal:

The American Journal of Human Genetics

Année:

2004

Langue:

english

Fichier:

PDF, 672 KB

english, 2004

23

Spread of an Inactive Form of Caspase-12 in Humans Is Due to Recent Positive Selection

Yali Xue, Allan Daly, Bryndis Yngvadottir, Mengning Liu, Graham Coop, Yuseob Kim, Pardis Sabeti, Yuan Chen, Jim Stalker, Elizabeth Huckle, John Burton, Steven Leonard, Jane Rogers, Chris Tyler-Smith

Journal:

The American Journal of Human Genetics

Année:

2006

Langue:

english

Fichier:

PDF, 1.23 MB

english, 2006

24

Deciphering the Ancient and Complex Evolutionary History of Human Arylamine N-Acetyltransferase Genes

Etienne Patin, Luis B. Barreiro, Pardis C. Sabeti, Frédéric Austerlitz, Francesca Luca, Antti Sajantila, Doron M. Behar, Ornella Semino, Anavaj Sakuntabhai, Nicole Guiso, Brigitte Gicquel, Ken McElrea

Journal:

The American Journal of Human Genetics

Année:

2006

Langue:

english

Fichier:

PDF, 523 KB

english, 2006

25

Common deletion polymorphisms in the human genome

McCarroll, Steven A, Hadnott, Tracy N, Perry, George H, Sabeti, Pardis C, Zody, Michael C, Barrett, Jeffrey C, Dallaire, Stephanie, Gabriel, Stacey B, Lee, Charles, Daly, Mark J, Altshuler, David M, T

Journal:

Nature Genetics

Année:

2006

Langue:

english

Fichier:

PDF, 342 KB

english, 2006

26

Searching for signals of evolutionary selection in 168 genes related to immune function

Emily C. Walsh, Pardis Sabeti, Holli B. Hutcheson, Ben Fry, Stephen F. Schaffner, Paul I. W. de Bakker, Patrick Varilly, Alejandro A. Palma, Jessica Roy, Richard Cooper, Cheryl Winkler, Yi Zeng, Guy d

Journal:

Année:

2006

Langue:

english

Fichier:

PDF, 491 KB

english, 2006

27

A global transcriptional analysis ofPlasmodium falciparummalaria reveals a novel family of telomere-associated lncRNAs

Kate M Broadbent, Daniel Park, Ashley R Wolf, Daria Van Tyne, Jennifer S Sims, Ulf Ribacke, Sarah Volkman, Manoj Duraisingh, Dyann Wirth, Pardis C Sabeti, John L Rinn

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.16 MB

english, 2011

28

Corrigendum: Human evolutionary genomics: ethical and interpretive issues: [Trends in Genetics 28 (2012)137–145]

Joseph J. Vitti, Mildred K. Cho, Sarah A. Tishkoff, Pardis C. Sabeti

Journal:

Trends in Genetics

Année:

2012

Langue:

english

Fichier:

PDF, 62 KB

english, 2012

29

High depth, whole-genome sequencing of cholera isolates from Haiti and the Dominican Republic

Sealfon, Rachel, Gire, Stephen, Ellis, Crystal, Calderwood, Stephen, Qadri, Firdausi, Hensley, Lisa, Kellis, Manolis, Ryan, Edward T, LaRocque, Regina C, Harris, Jason B, Sabeti, Pardis C

Journal:

Année:

2012

Langue:

english

Fichier:

PDF, 1.36 MB

english, 2012

30

Many ways to die, one way to arrive: how selection acts through pregnancy

Brown, Elizabeth A., Ruvolo, Maryellen, Sabeti, Pardis C.

Journal:

Trends in Genetics

Année:

2013

Langue:

english

Fichier:

PDF, 347 KB

english, 2013

31

The adaptive variantEDARV370Ais associated with straight hair in East Asians

Tan, Jingze, Yang, Yajun, Tang, Kun, Sabeti, Pardis C., Jin, Li, Wang, Sijia

Journal:

Année:

2013

Langue:

english

Fichier:

PDF, 286 KB

english, 2013

32

FRESCo: finding regions of excess synonymous constraint in diverse viruses

Sealfon, Rachel S, Lin, Michael F, Jungreis, Irwin, Wolf, Maxim Y, Kellis, Manolis, Sabeti, Pardis C

Journal:

Année:

2015

Langue:

english

Fichier:

PDF, 2.63 MB

english, 2015

33

ISCB Ebola Award for Important Future Research on the Computational Biology of Ebola Virus

Karp, Peter D., Berger, Bonnie, Kovats, Diane, Lengauer, Thomas, Linial, Michal, Sabeti, Pardis, Hide, Winston, Rost, Burkhard

Journal:

Année:

2015

Langue:

english

Fichier:

PDF, 288 KB

english, 2015

34

Evaluation of the Potential Impact of Ebola Virus Genomic Drift on the Efficacy of Sequence-Based Candidate Therapeutics

Kugelman, Jeffrey R., Sanchez-Lockhart, Mariano, Andersen, Kristian G., Gire, Stephen, Park, Daniel J., Sealfon, Rachel, Lin, Aaron E., Wohl, Shirlee, Sabeti, Pardis C., Kuhn, Jens H., Palacios, Gusta

Journal:

Année:

2015

Langue:

english

Fichier:

PDF, 602 KB

english, 2015

35

A Malaria Fingerprint in the Human Genome?

Daily, Johanna P., Sabeti, Pardis

Journal:

Boston Medical and Surgical Journal

Année:

2008

Langue:

english

Fichier:

PDF, 85 KB

english, 2008

36

GB Virus C Coinfections in West African Ebola Patients

Lauck, Michael, Bailey, Adam L., Andersen, Kristian G., Goldberg, Tony L., Sabeti, Pardis C., O'Connor, David H., Silvestri, G.

Journal:

Journal of Virology

Année:

2015

Langue:

english

Fichier:

PDF, 207 KB

english, 2015

37

COIL: a methodology for evaluating malarial complexity of infection using likelihood from single nucleotide polymorphism data

Galinsky, Kevin, Valim, Clarissa, Salmier, Arielle, de Thoisy, Benoit, Musset, Lise, Legrand, Eric, Faust, Aubrey, Baniecki, Mary, Ndiaye, Daouda, Daniels, Rachel F, Hartl, Daniel L, Sabeti, Pardis C,

Journal:

Malaria Journal

Année:

2015

Langue:

english

Fichier:

PDF, 696 KB

english, 2015

38

Strand-specific RNA sequencing in Plasmodium falciparum malaria identifies developmentally regulated long non-coding RNA and circular RNA

Broadbent, Kate M, Broadbent, Jill C, Ribacke, Ulf, Wirth, Dyann, Rinn, John L, Sabeti, Pardis C

Journal:

Année:

2015

Langue:

english

Fichier:

PDF, 2.50 MB

english, 2015

39

ISCB Ebola Award for Important Future Research on the Computational Biology of Ebola Virus

Karp, Peter D., Berger, Bonnie, Kovats, Diane, Lengauer, Thomas, Linial, Michal, Sabeti, Pardis, Hide, Winston, Rost, Burkhard

Journal:

PLoS Computational Biology

Année:

2015

Langue:

english

Fichier:

PDF, 125 KB

english, 2015

40

The Case for Selection at CCR5-Δ32

Sabeti, Pardis C., Walsh, Emily, Schaffner, Steve F., Varilly, Patrick, Fry, Ben, Hutcheson, Holli B., Cullen, Mike, Mikkelsen, Tarjei S., Roy, Jessica, Patterson, Nick, Cooper, Richard, Reich, David,

Journal:

Année:

2005

Langue:

english

Fichier:

PDF, 1.02 MB

english, 2005

41

Ancient and Recent Adaptive Evolution of Primate Non-Homologous End Joining Genes

Demogines, Ann, East, Alysia M., Lee, Ji-Hoon, Grossman, Sharon R., Sabeti, Pardis C., Paull, Tanya T., Sawyer, Sara L., Schierup, Mikkel H.

Journal:

Année:

2010

Langue:

english

Fichier:

PDF, 2.02 MB

english, 2010

42

Positive Selection of a Pre-Expansion CAG Repeat of the Human SCA2 Gene

Yu, Fuli, Sabeti, Pardis C., Hardenbol, Paul, Fu, Qing, Fry, Ben, Lu, Xiuhua, Ghose, Sy, Vega, Richard, Perez, Ag, Pasternak, Shiran, Leal, Suzanne M., Willis, Thomas D., Nelson, David L., Belmont, Jo

Journal:

Année:

2005

Langue:

english

Fichier:

PDF, 540 KB

english, 2005

43

Identification of Two Independent Risk Factors for Lupus within the MHC in United Kingdom Families

Fernando, Michelle M. A., Stevens, Christine R., Sabeti, Pardis C., Walsh, Emily C., McWhinnie, Alasdair J. M., Shah, Anila, Green, Todd, Rioux, John D., Vyse, Timothy J.

Journal:

Année:

2007

Langue:

english

Fichier:

PDF, 842 KB

english, 2007

44

EDARV370Aassociated facial characteristics in Uyghur population revealing further pleiotropic effects

Peng, Qianqian, Li, Jinxi, Tan, Jingze, Yang, Yajun, Zhang, Manfei, Wu, Sijie, Liu, Yu, Zhang, Juan, Qin, Pengfei, Guan, Yaqun, Jiao, Yi, Zhang, Zhaoxia, Sabeti, Pardis C., Tang, Kun, Xu, Shuhua, Jin,

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 1.17 MB

english, 2016

45

Immunity, infection, migration and human evolution || Genome-wide scans provide evidence for positive selection of genes implicated in Lassa fever

Kristian G. Andersen, Ilya Shylakhter, Shervin Tabrizi, Sharon R. Grossman, Christian T. Happi and Pardis C. Sabeti

Journal:

Philosophical Transactions Biological Sciences

Année:

2012

Langue:

english

Fichier:

PDF, 2.26 MB

english, 2012

46

Genome-wide scans reveal variants atEDARpredominantly affecting hair straightness in Han Chinese and Uyghur populations

Wu, Sijie, Tan, Jingze, Yang, Yajun, Peng, Qianqian, Zhang, Manfei, Li, Jinxi, Lu, Dongsheng, Liu, Yu, Lou, Haiyi, Feng, Qidi, Lu, Yan, Guan, Yaqun, Zhang, Zhaoxia, Jiao, Yi, Sabeti, Pardis, Krutmann,

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 1.23 MB

english, 2016

47

Genomic Analysis of Viral Outbreaks

Wohl, Shirlee, Schaffner, Stephen F., Sabeti, Pardis C.

Journal:

Annual Review of Virology

Année:

2016

Langue:

english

Fichier:

PDF, 715 KB

english, 2016

48

In vivo Ebola virus infection leads to a strong innate response in circulating immune cells

Caballero, Ignacio S., Honko, Anna N., Gire, Stephen K., Winnicki, Sarah M., Melé, Marta, Gerhardinger, Chiara, Lin, Aaron E., Rinn, John L., Sabeti, Pardis C., Hensley, Lisa E., Connor, John H.

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 843 KB

english, 2016

49

Unbiased Deep Sequencing of RNA Viruses from Clinical Samples

Matranga, Christian B., Gladden-Young, Adrianne, Qu, James, Winnicki, Sarah, Nosamiefan, Dolo, Levin, Joshua Z., Sabeti, Pardis C.

Journal:

Journal of Visualized Experiments

Année:

2016

Langue:

english

Fichier:

PDF, 317 KB

english, 2016

50

Identifying the favored mutation in a positive selective sweep

Akbari, Ali, Vitti, Joseph J, Iranmehr, Arya, Bakhtiari, Mehrdad, Sabeti, Pardis C, Mirarab, Siavash, Bafna, Vineet

Journal:

Année:

2018

Langue:

english

Fichier:

PDF, 1.63 MB

english, 2018